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Mikrobióm bioinformatika: Komplex bakteriális közösségek számítógépes analizise és modellezése
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Ezen az oldalon az NKFI Elektronikus Pályázatkezelő Rendszerében nyilvánosságra hozott projektjeit tekintheti meg.
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Közleményjegyzék |
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Ádám Nagy, Balázs Ligeti, János Szebeni, Sándor Pongor, Balázs Győrffy: COVIDOUTCOME – Estimating COVID Severity Based on Mutation Signatures in the SARS-CoV-2 Genome, DATABASE-JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2021 | Juhász János, Ligeti Balázs, Gajdács Márió, Makra Nóra, Ostorházi Eszter, Farkas Ferenc Balázs, Stercz Balázs, Tóth Ákos, Domokos Judit, Pongor Sándor, Szabó Dóra: Colonization Dynamics of Multidrug-Resistant Klebsiella pneumoniae Are Dictated by Microbiota-Cluster Group Behavior over Individual Antibiotic Susceptibility: A Metataxonomic Analysis, ANTIBIOTICS 10: (3) 268, 2021 | Moreno-Indias Isabel, Lahti Leo, Nedyalkova Miroslava, Elbere Ilze, Roshchupkin Gennady, Adilovic Muhamed, Aydemir Onder, Bakir-Gungor Burcu, Santa Pau Enrique Carrillo-de, D’Elia Domenica, Desai Mahesh S., Falquet Laurent, Gundogdu Aycan, Hron Karel, Klammsteiner Thomas, Lopes Marta B., Marcos-Zambrano Laura Judith, Marques Cláudia, Mason Michael, May Patrick, Pašić Lejla, Pio Gianvito, Pongor Sándor, Promponas Vasilis J., Przymus Piotr, Saez-Rodriguez Julio, Sampri Alexia, Shigdel Rajesh, Stres Blaz, Suharoschi Ramona, Truu Jaak, Truică Ciprian-Octavian, Vilne Baiba, Vlachakis Dimitrios, Yilmaz Ercument, Zeller Georg, Zomer Aldert L., Gómez-Cabrero David, Claesson Marcus J.: Statistical and Machine Learning Techniques in Human Microbiome Studies: Contemporary Challenges and Solutions, FRONTIERS IN MICROBIOLOGY 12: p. 1., 2021 | Nagy Á., Pongor S., Győrffy B.: Different mutations in SARS-CoV-2 associate with severe and mild outcome, INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS 57: (2) 106272, 2021 | Stercz B, Farkas B. Ferenc, Tóth Á, Gajdács M, Domokos J, Horváth V, Ostorházi E, Makra N, Kocsis B, Juhász J, Ligeti B, Pongor S, Szabó D: The influence of antibiotics on transitory resistome during gut colonization with CTX-M-15 and OXA-162 producing Klebsiella pneumoniae ST15, SCIENTIFIC REPORTS 11: 6335, 2021 | Juhász János, Gáspári Zoltán, Pongor Sándor: Structure and Oxidative Folding of AAI, the Major Alfa-Amylase Inhibitor From Amaranth Seeds, FRONTIERS IN CHEMISTRY 8: p. 180., 2020 | Juhász János, Sándor Pongor, Balázs Ligeti: Toward a Systematic Genomic Survey of Bacterial Quorum Sensing Genes, In: V., Ravishankar Rai; Jamuna, A Bai (szerk.) Trends in Quorum Sensing and Quorum Quenching, CRC Press - Taylor and Francis Group (2020) p. 31., 2020 | Regina Kalcsevszki, János Juhász, Sándor Pongor, Balázs Ligeti: Biomarkers for Colorectal Carcinoma Prediction from Compositional Microbiome Data, , 2020 | Abraham Dora, Feher Janos, Scuderi Gian Luca, Szabo Dora, Dobolyi Árpád, Cservenak Melinda, Juhasz Janos, Ligeti Balazs, Pongor Sandor, Gomez-Cabrera Mari Carmen, Vina Jose, Higuchi Mitsuru, Suzuki Katsuhiro, Boldogh Istvan, Radak Zsolt: Exercise and probiotics attenuate the development of Alzheimer's disease in transgenic mice: Role of microbiome, EXPERIMENTAL GERONTOLOGY 115: pp. 122-131., 2019 | Balázs Ligeti, Éva M. Kistóth, Regina Kalcsevszki, Bálint. S. Stellek, János Juhász, Sándor Pongor: Fast and sensitive detection of pathogens from high throughput sequencing data, In: Buday, László; Erdélyi, Miklós; Kovács, Mihály; Mihály, József; Varga, Máté; Virág, László; Hohol, Róbert (szerk.) Porgramme and Books of abstracts - Hungarian Molecular Life Sciences 2019, Diamond Congress Kft. (2019) pp. 91-92., 2019 | Balázs Ligeti, Hőnich Ágnes Kata, János Juhász, Sándor Pongor: Surveying bacteriophages of the human gut, JEDLIK LABORATORIES REPORTS 7: (1) p. 79., 2019 | János Juhász, Balázs Ligeti, Sándor Pongor: Modelling genomic and metabolic responses of microbial communities to antibiotics, JEDLIK LABORATORIES REPORTS 7: (1) pp. 77-78., 2019 | János Juhász, Éva Mercédesz Kistóth, Zoltán Nagy, Péter Szolgay, Sándor Pongor, Balázs Ligeti: Towards a systematic census of bacterial quorum sensing genes in public databases, JEDLIK LABORATORIES REPORTS 7: (1) pp. 72-74., 2019 | Kalcsevszki Regina, Juhász János, Pongor Sándor, Ligeti Balázs: Quest for Biomarkers in Microbiome Data, JEDLIK LABORATORIES REPORTS 7: (4) pp. 84-84., 2019 | Kalcsevszki Regina, Juhász János, Pongor Sándor, Ligeti Balázs: Quest for Biomarkers in Microbiome Data, , 2019 | Kistóth Mercédesz, Juhász János, Nagy Zoltán, Szolgay Péter, Pongor Sándor, Ligeti Balázs: Identifying ComQXPA bacterial quorum sensing system candidates in reference sequence databases using Hidden Markov Models, JEDLIK LABORATORIES REPORTS 7: (4) pp. 88-88., 2019 | Ligeti Balázs, Juhász János, Kistóth Mercédesz, Pongor Sándor: Exploring the quorum sensing systems in bacterial genomes, JEDLIK LABORATORIES REPORTS 7: (4) pp. 70-72., 2019 | Ligeti Balázs, Menyhárt Otilia, Juhász János, Pongor Sándor, Győrffy Balázs: Network-based prediction of drug-combination efficiency based on expression data on off target genes, JEDLIK LABORATORIES REPORTS 7: (1) pp. 75-76., 2019 | Juhasz J, Bihary D, Jady A, Pongor S, Ligeti B: Differential signal sensitivities can contribute to the stability of multispecies bacterial communities, BIOLOGY DIRECT 12: (1) 22, 2017 | Ligeti B, Menyhárt O, Petrič I, Győrffy B, Pongor S: Propagation on molecular interaction networks: Prediction of effective drug combinations and biomarkers in cancer treatment, CURRENT PHARMACEUTICAL DESIGN 23: (1) pp. 5-28., 2017 | Ligeti B, Vera R, Juhász J, Pongor S: CX, DPX, AND PCW: Web servers for the visualization of interior and protruding regions of protein structures in 3D and 1D, In: Yaoqi, Zhou; Andrzej, Kloczkowski; Eshel, Faraggi; Yuedong, Yang (szerk.) Prediction of Protein Secondary Structure, Springer (2017) pp. 301-309., 2017 | Nagy G, Czipa E, Steiner L, Nagy T, Pongor S, Nagy L, Barta E: Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA., BMC GENOMICS 17: (1) 637, 2016 |
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