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Role of structural dynamics in interactions of peptides and proteins
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List of publications |
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Pohl G, Jákli I, Csizmadia IG, Papp D, Matías GF, Perczel A: The role of entropy in initializing the aggregation of peptides: A first principle study on oligopeptide oligomerization, PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2012 | Jákli I, Knak Jensen SJ, Csizmadia IG, Perczel A: Variation of conformational properties at a glance. True graphical visualization of the Ramachandran surface topology as a periodic potential energy surface, CHEMICAL PHYSICS LETTERS 547:pp. 82-88, 2012 | Annamária F Ángyán, András Perczel, Zoltán Gáspári: Estimating intrinsic structural preferences of de novo emerging random-sequence proteins: Is aggregation the main bottleneck?, FEBS LETTERS 586:pp. 2468-2472., 2012 | bolya Leveles , Veronika Németh , Judit E. Szabó , Veronika Harmat , Kinga Nyíri , Ábris Ádám Bendes , Veronika Papp-Kádár , Imre Zagyva , Gergely Róna , Olivér Ozohanics , Károly Vékey , Judit Tóth , Beáta G. Vértessy: Structure and enzymatic mechanism of a moonlighting dUTPase, Acta Crystallogr D Biol Crystallogr. D69:2298-2308, 2013 | Klára Z. Gerlei , Imre Jákli , Milán Szőri , Svend J. Knak Jensen , Béla Viskolcz , Imre G. Csizmadia , András Perczel: Atropisomerism of the Asn α Radicals Revealed by Ramachandran Surface Topology., J. Phys. Chem. B, 117(41):12402-12409, 2013 | Orsolya Barabás , Vince I. Grolmusz , Zoltán Szabadka , Imre Zagyva , Zoltán Kele , Edina Rosta , András Perczel , Andrea Bodor , Veronika Németh , Matthias Wilmanns: Catalytic mechanism of α-phosphate attack in dUTPase is revealed by X-ray crystallographic snapshots of distinct intermediates, 31P-NMR spectroscopy and reaction path mod, Nucleic Acids Res. DOI: 10.1093/nar/gkt756, 2013 | Adriana D. Garro , Ana M. Rodríguez , Javier López Cascales , Botond Penke , Csaba Somlai , András Perczel , Gabriela Feresin , Alejandro Tapia , Beatriz Lima , José A. Bombasaro , Mónica S. Olivella , Ricardo D. Enriz: Penetratin and derivatives acting as antibacterial agents, Chem. Biol. Drug. Des. 82(2):167-177., 2013 | Gábor Pohl , Esther Gorrea , Vicenç Branchadell , Rosa M. Ortuño , András Perczel , György Tarczay: Foldamers of β-peptides: conformational preference of peptides formed by rigid building blocks. The first MI-IR spectra of a triamide nanosystem., Amino Acids 45(4):957-973., 2013 | Dóra K. Menyhárd , Anna Kiss-Szemán , Éva Tichy-Rács , Balázs Hornung , Krisztina Rádi , Zoltán Szeltner , Klarissza Domokos , Ilona Szamosi , Gábor Náray-Szabó , László Polgár , Veronika Harmat: A self-compartmentalizing hexamer serine protease from Pyrococcus horikoshii: substrate selection achieved through multimerization, J Biol Chem 288(24):17884-17894., 2013 | Imre Jákli , Szilárd N. Fejér , Ödön Farkas , Béla Viskolcz , Svend J. Knak Jensen , Imre G. Csizmadia , András Perczel: Helix compactness and stability: Electron structure calculations of conformer, Chem. Phys. Lett. 563:80-87, 2013 | Viktor Farkas , Barbara Csordás , Orsolya Hegyi , Gábor K. Tóth , András Perczel: Foldamer Stability Coupled to Aggregation Propensity of Elongated Trp-Cage, Eur. J. Org. Chem. 13:3513-3522., 2013 | Márton Megyeri , Veronika Harmat , Balázs Major , Ádám Végh , Júlia Balczer , Dávid Héja , Katalin Szilágyi , Dániel Datz , Gábor Pál , Péter Závodszky , Péter Gál , József Dobó: Quantitative characterization of the activation steps of Mannan-Binding Lectin (MBL)-Associated Serine Proteases (MASPs) points to the central role of MASP-1 in the initi, J Biol Chem 288(13):8922-8934., 2013 | Structural insights into the Trp-cage folding intermediate formation: Petra Rovó , Pál Stráner , András Láng , István Bartha , Kristóf Huszár , László Nyitray , András Perczel, Chem. Eur. J. 19(8):2628-2640., 2013 | Bodor A, Radnai L, Hetenyi C, Rapali P, Lang A, Kover KE, Perczel A, Wahlgren WY, Katona G, Nyitray L: DYNLL2 dynein light chain binds to an extended linear motif of myosin 5a tail that has structural plasticity., BIOCHEMISTRY 53:(45) pp. 7107-7122, 2014 | Galant NJ, Song HC, Jákli I, Viskolcz B, Csizmadia IG, Knak Jensen SJ, Perczel A: A theoretical study of the stability of disulfide bridges in various β-sheet structures of protein segment models, CHEMICAL PHYSICS LETTERS 593: pp. 48-54., 2014 | Gerlei KZ, Élo L, Fiser B, Owen MC, Jákli I, Knak Jensen SJ, Csizmadia IG, Perczel A, Viskolcz B: Impairment of a model peptide by oxidative stress: Thermodynamic stabilities of asparagine diamide Cα-radical foldamers, CHEMICAL PHYSICS LETTERS 593: pp. 104-108., 2014 | Náray-Szabó G, Perczel A: Protein structure and dynamics, INTERNATIONAL JOURNAL OF TERRASPACE SCIENCE AND ENGINEERING 6: pp. 7-16., 2014 | Rovó P, Menyhárd DK, Náray-Szabó G, Perczel A: Dynamics of Small, Folded Proteins, Protein Modelling. Cham: Springer, 2014. pp. 223-248. (ISBN:978-3-319-09975-0), 2014 | Rovo Petra, Farkas Viktor, Straner Pal, Szabo Maria, Jermendy Agnes, Hegyi Orsolya, Toth Gabor K, Perczel Andras: Rational Design of α-Helix-Stabilized Exendin-4 Analogues, BIOCHEMISTRY 53:(22) pp. 3540-3552., 2014 | Tory K, Menyhard DK, Woerner S, Nevo F, Gribouval O, Kerti A, Straner P, Arrondel C, Cong EH, Tulassay T, Mollet G, Perczel A, Antignac C: Mutation-dependent recessive inheritance of NPHS2-associated steroid-resistant nephrotic syndrome, NATURE GENETICS 46:(3) pp. 299-304., 2014 | Vajda T, Perczel A: Role of water in protein folding, oligomerization, amyloidosis and miniprotein, JOURNAL OF PEPTIDE SCIENCE 20:(10) pp. 747-759., 2014 | Menyhard, D.K.; Orgovan, Z.; Szeltner, Z.; Szamosi, I.; Harmat, V.: Catalytically distinct states captured in a crystal lattice: the substrate-bound and scavenger states of acylaminoacyl peptidase and their implications for functionality, Acta Cryst D., 2014 | Anita Alexa , Gergő Gógl , Gábor Glatz , Ágnes Garai , András Zeke , János Varga , Erika Dudás , Norbert Jeszenői , Andrea Bodor , Csaba Hetényi , Attila Reményi: • Structural assembly of the signaling competent ERK2–RSK1 heterodimeric protein kinase complex, Proc. Natl. Acad. Sci. USA, 2015 | Dóra K. Menyhárd , Zoltán Orgován , Zoltán Szeltner , Ilona Szamosi , Veronika Harmat: • Catalytically distinct states captured in a crystal lattice: the substrate-bound and scavenger states of acylaminoacyl peptidase and their implications for functionalit, Acta Crystallogr D Biol Crystallogr., 2015 | Kata N. Enyedi , András Czajlik , Krisztina Knapp , András Láng , Zsuzsa Majer , Eszter Lajkó , László Kőhidai , András Perczel , Gábor Mező: • Development of cyclic NGR-peptides with thioether linkage: structure and dynamics determining deamidation and bioactivity, J. Med. Chem, 2015 | József Kardos , Bence Kiss , András Micsonai , Petra Rovó , Dóra K. Menyhárd , János Kovács , Gábor K. Tóth , András Perczel: • Phosphorylation as Conformational Switch from the Native to Amyloid State: Trp-Cage as a Protein Aggregation Model, J. Phys. Chem. B, 2015 | Csordás B, Nagy A, Harmat V, Zsoldos-Mády V, Leveles I, Pintér I, Farkas V, Perczel A: Origin of problems related to Staudinger reduction in carbopeptoid syntheses, Amino Acids, 2016 | Farkas V, Jákli I, Tóth GK, Perczel A: Aromatic cluster sensor of protein folding: near-UV ECD bands assigned to fold compactness, Chemistry A Eur. J. 22:13871-13883, 2016 | Gógl G, Alexa A, Kiss B, Katona G, Kovács M, Bodor A, Reményi A, Nyitray L: Structural basis of Ribosomal S6 Kinase 1 (RSK1) inhibition by S100B Protein: modulation of the Extracellular Signal-regulated Kinase (ERK) signaling cascade in a calcium-dependent way., J Biol Chem. 291(1):11-27, 2016 | Goldschmidt Gőz V, Pintér I, Csámpai A, Jákli I, Zsoldos-Mády V, Perczel A: Hydrogen-Bonding Network Anchors the Cyclic Form of Sugar Arylhydrazones, Eur J Org Chem. 20:3419-3426, 2016 | Nagy A, Zsoldos-Mády V, Csordás B, Pintér I, Farkas V, Perczel A: C-3 epimers of sugar amino acids as foldameric building blocks: improved synthesis, useful derivatives, coupling strategies, Amino Acids 49:223-230, 2016 | Pálfy G, Kiss B, Nyitray L, Bodor A: Multilevel Changes in Protein Dynamics upon Complex Formation of the Calcium-Loaded S100A4 with a Nonmuscle Myosin IIA Tail Fragment., Chembiochem. 17(19):1829-1838, 2016 | Parravicini O, Somlai C, Andujar SA, Garro AD, Lima B, Tapia A, Feresin G, Perczel A, Tóth G, Cascales JL, Rodríguez AM, Enriz RD: Small Peptides Derived from Penetratin as Antibacterial Agents, Arch Pharm (Weinheim). 349(4):242-251, 2016 | Stráner P, Taricska N, Szabó M, Tóth GK, Perczel A: Bacterial expression and/or solid phase peptide synthesis of 20-40 amino acid long polypeptides and miniproteins, the case study of Class B GPCR ligands., Curr Protein Pept Sci. 17(2):147-55., 2016 | Szaniszló Sz, Csizmadia IG, Perczel A: How weak an acid can be? Variations of H-bond and/or van der Waals interaction of weak acids., Struct Chem. 28:371-378., 2017 | Nemes A, Csóka T, Béni Sz, Farkas V, Rabai J, Szabó D: Chiral recognition studies of alpha-(nonafluoro-tert-butoxy)carboxylic acids by NMR spectroscopy, J Org Chem. 80: 6267-6274., 2015 |
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