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Transzmembrán fehérjék bioinformatikai szerkezet vizsgálata
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Ezen az oldalon az NKFI Elektronikus Pályázatkezelő Rendszerében nyilvánosságra hozott projektjeit tekintheti meg.
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Közleményjegyzék |
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Tusnády GE, Sarkadi B, Simon I and Váradi A: Membrane topology of human ABC proteins., FEBS Lett 580, 1017-1022, 2006 | Tompa P, Dosztányi Zs and Simon I: Prevalent Structural Disorder in E. coli and S. cerevisiae Proteomes, J Proteome Res 5, 1996-2000, 2006 | Solt I, Magyar Cs, Simon I, Tompa P and Fuxreiter M: Phosphorylation-induced transient intrinsic structure in the kinase-inducible domain of CREB facilitates its recognition by the KIX domain of CBP, Proteins 64, 749-757., 2006 | Dosztányi Zs, Chen J, Dunker AK, Simon I and Tompa P: Disorder and Sequence Repeats in Hub Proteins and Their Implications for Network Evolution, J Proteome Res 5, 2985-2995., 2006 | Tusnády GE, Kalmár L and Simon I: TOPDB: topology data bank of transmembrane proteins., Nucleic Acids Res 36, D234-D239, 2008 | Dosztanyi Z, Sandor M, Tompa P, Simon I: Prediction of Protein Disorder at the Domain Level, CURR PROTEIN PEPT SC 8: 161-171, 2007 | Fuxreiter M, Tompa P, Simon I: Local structural disorder imparts plasticity on linear motifs, BIOINFORMATICS 23: 950-956, 2007 | Meszaros B, Tompa P, Simon I, Dosztanyi Z: Molecular principles of the interactions of disordered proteins, J MOL BIOL 372: 549-561, 2007 | Mones L, Simon I, Fuxreiter M: Metal-binding sites at the active site of restriction endonuclease BamHI can conform to a one-ion mechanism, BIOL CHEM 388: 73-78, 2007 | Mones L, Kulhanek P, Florián J, Simon I, Fuxreiter M: Probing the Two-Metal Ion Mechanism in the Restriction Endonuclease BamHI, BIOCHEMISTRY-US 46: 14514-14523, 2007 | Nemeth-Pongracz V, Barabas O, Fuxreiter M, Simon I, Pichova I, Rumlova M, Zabranska H, Svergun D, Petoukhov M, Harmat V, Klement E, Hunyadi-Gulyas E, Medzihradszky KF, Konya E, Vertessy BG: Flexible segments modulate co-folding of dUTPase and nucleocapsid proteins, NUCLEIC ACIDS RES 35: 495-505, 2007 | Solt I, Simon I, Csaszar AG, Fuxreiter M: Electrostatic versus Nonelectrostatic Effects in DNA Sequence Discrimination by Divalent Ions Mg2+ and Mn2+, J PHYS CHEM B 111: 6272-6279, 2007 | Dosztányi Zs, Csizmók V, Tompa P and Simon I: The Pairwise Energy Content Estimated from Amino Acid Composition Discriminates between Folded and Intrinsically Unstructured Proteins., J Mol Biol 347, 827-39., 2005 | Dosztányi Zs, Csizmók V, Tompa P and Simon I: IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content., Bioinformatics 21, 3433-4., 2005 | Fuxreiter M, Magyar Cs, Juhász T, Szeltner Z, Polgár L and Simon I: Flexibility of prolyl oligopeptidase: molecular dynamics and molecular framework analysis of the potential substrate pathways., Proteins 60, 504-12., 2005 | Fuxreiter M, Mezei M, Simon I and Osman R: Interfacial Water as a "Hydration Fingerprint" in the Noncognate Complex of BamHI., Biophys J 89, 903-11., 2005 | Magyar Cs, Gromiha MM, Pujadas G, Tusnády GE and Simon I: SRide: a server for identifying stabilizing residues in proteins., Nucleic Acids Res 33, W303-5., 2005 | Tusnády GE, Dosztányi Zs and Simon I: PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank., Nucleic Acids Res 33 D275-D278., 2005 | Tusnády GE, Dosztányi Zs and Simon I: TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates., Bioinformatics 21, 1276-1277., 2005 | Tusnády GE, Simon I, Váradi A and Arányi T: BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes., Nucleic Acids Res 33, e9., 2005 | Arányi T, Váradi A, Simon I and Tusnády GE: The BiSearch web server, BMC Bioinformatics 7, 431, 2006 | Csizmok V, Dosztanyi Z, Simon I, Tompa P: Towards Proteomic approaches for the Identification of Protein Disorder, CURR PROTEIN PEPT SC 8: 173-179, 2007 |
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